Plant MITE

SE2810086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9091
Sorghum bicolor
SE2810086
Tc1/Mariner
St11
chromosome_8:51019258-51019570
TA
TACTCCCTCCGTCCATTTATCTC

Secondary structure and sequence

TSD TIR

5'

3'

            C    TA    AATCA       AAAAAAAAATT    TTATCTC  TCATCTTGAGGTGACCGGCTATAATTATGGTTATGTCTTGCATGCATGTTGGCCATTCATTGGGTGCATGCACACGTGTCCATGGAGGACCTAGGCCATCTTGGCT
TACTCCCTCCGT CATT  TCTC     TTTAAGC           CCAA       CA                                                                                                          
|||||||||||| ||||  ||||     |||||||           ||||       ||                                                                                                           
ATGAGGGAGGCA GTAA  AGAG     AAATTCG           GAAC       CG                                                                                                          
            T    TC    GAAAC       -----------    ------A  TGTCTCTGGTTCCTCGTACTTACTGAGTGCAGAAAAGTTATTTAGTAACACCTGAACACCAGGTTAATTAGATTAATTACACGTATGGACGTACGTTGGTTCCTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810086

TACTCCCTCCGTCCATTTATCTCAATCATTTAAGCAAAAAAAAATTCCAATTATCTCCATCATCTTGAGGTGACCGGCTATAATTATGGTTATGTCTTGCATGCATGTTGGCCATTCATTGGGTGCATGCACACGTGTCCATGGAGGACCTAGGCCATCTTGGCTGCTCCTTGGTTGCATGCAGGTATGCACATTAATTAGATTAATTGGACCACAAGTCCACAATGATTTATTGAAAAGACGTGAGTCATTCATGCTCCTTGGTCTCTGTGCACAAGGCTTAAACAAAGGAGACTAATGTACGGAGGGAGTA

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