Plant MITE

SE2850087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9092
Sorghum bicolor
SE2850087
PIF/harbinger
To1
chromosome_6:970609-970846
TTA
AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                GAGA        ---       GCTA    AG   TT   TTTG         AATATTATCC    ATAGACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAGGTA
  AGGCCTTGTTTAGTTT    AAAATTTT   GGATTTC    CTGT  CAC  TCG    TTTGTGGCA          AATC                                             
  ||||||||||||||||    ||||||||   |||||||    ||||  |||  |||    |||||||||          ||||                                              
  TCCGGAACAAATCAAA    TTTTAAAA   TCTAAAG    GGCA  GTG  AGC    GAACGCCGT          TACG                                             
AT                --AG        AGT       ----    --   -T   -TTA         ---------G    TACTTCGTAATTTATATCTGCTTTTGTTTTTGATTAATGCATCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850087

TTAGGCCTTGTTTAGTTTGAGAAAAATTTTGGATTTCGCTACTGTAGCACTTTCGTTTGTTTGTGGCAAATATTATCCAATCATAGACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAGGTAAACTACGTAATTAGTTTTTGTTTTCGTCTATATTTAATGCTTCATGCATGTGCCGCAAGATTCGATGTGACGGGAAATCTTGAAAAATTTTGAAAACTAAACAAGGCCTTA

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