SE2850089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9094
  • Sorghum bicolor
  • SE2850089
  • PIF/harbinger
  • To1
  • chromosome_2:14946106-14946576
  • TAA
  • AGGCCTTGTTCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C      CAAAAAATGGTGAAAAACGGCACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATTATAGAGTAACTAGACTCAAAAGATTCATCTCACGGTTTATAGATGAACTGTGCAAATAGTTTTTGTTTTTATCTATATTTAATGCTCCATGCATGTGCCGCAAGATTTGATGTGACGGGGAATCTTGAAAAATTTTGCGAACTAAACATTGTT
  AGGCCTTGTT AGTTCG                                                                                                                                                                                                                        
  |||||||||| ||||||                                                                                                                                                                                                                        T
  TCCGGAACAA TCAAGG                                                                                                                                                                                                                        
AA          A      CCTCCCTTTAAAAAAGCGCCGTGACATCGTGAAAGCAAACAAACACTATTAATAACAGGTTAATACCTGATTGATCCGAATTTCTAAGCAGAGCATTTAAAACTGGTTTGACACGTTAATCAAAAATAAAAATAAATATAAATTATGAGGTATGTACACAGATTTCTAAGCTACACTGTCCCTTAGAACTTTTCAAAAACCTAAAACCGACCTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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