Plant MITE

SE2830093

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9098
Sorghum bicolor
SE2830093
hAT
Hat8
chromosome_2:57157146-57157318
GACGGCAC
GCACCAGTGGCGAAGCTA

Secondary structure and sequence

TSD TIR

5'

3'

GACG  --A               -----GAG    TT      TGGTGCATTTCTCTTGTAGATGTAAAAATATAAGCAACAACCATGGTG
    GC   CCAGTGGCGAAGCTA        CTAT  AGAGGG                                                
    ||   |||||||||||||||        ||||  ||||||                                                 
    CG   GGTCACCGCTTCGAT        GAAC  ACCCAC                                                
  CA  GCA               ACAATATC    --      GTTTACGTGGGTGTTCTTAAATTTTTTAGTGATGATTTTAATTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830093

GACGGCACCAGTGGCGAAGCTAGAGCTATTTAGAGGGTGGTGCATTTCTCTTGTAGATGTAAAAATATAAGCAACAACCATGGTGAAAATTTAATTTTAGTAGTGATTTTTTAAATTCTTGTGGGTGCATTTGCACCCACAAGCTATAACATAGCTTCGCCACTGGACGGCAC

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