Plant MITE

SE2830094

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9099
Sorghum bicolor
SE2830094
hAT
Hat2
chromosome_9:388257-388434
TACATAAG
GTAAGGATGGGGATGATGCTTCAAATGGGTACCCGCGGTTATTCTCTAGTCTAATTTAATGAACTAAATAGA

Secondary structure and sequence

TSD TIR

5'

3'

TACATAA               A                   C    A  C         A               A  CAATTTCTTT
       GTAAGGATGGGGATG TGCTTCAAATGGGTACCCG GGTT TT TCTAGTCTA TTTAATGAACTAAAT GA          
       ||||||||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||||||||||| ||          C
       TATTCCTACCCCTAC ACGAGGTTTACCTATGGGT TCAA AA AGATCAGAT GAATTACTTGATTTA CT          
GAATACA               C                   C    G  C         A               -  TATTTTACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830094

TACATAAGTAAGGATGGGGATGATGCTTCAAATGGGTACCCGCGGTTATTCTCTAGTCTAATTTAATGAACTAAATAGACAATTTCTTTCCTCATTTTATTCATTTAGTTCATTAAGATAGACTAGACAAGAACTCTGGGTATCCATTTGGAGCACCATCCCCATCCTTATACATAAG

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