Plant MITE

SE2850097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9102
Sorghum bicolor
SE2850097
PIF/harbinger
To21
chromosome_6:1794480-1794663
TAA
AGGGCCTGTTTGGTTCCCCTTGCTAAACTTTAGCTAGCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   G             C         C             AATT       C    C    G    TAATGAGACTAAACTATTTTAGCTCC
  AGG CCTGTTTGGTTCC CTTGCTAAA TTTAGCTAGCTAA    ATTTTAG TACT TTGG TGAC                          
  ||| ||||||||||||| ||||||||| |||||||||||||    ||||||| |||| |||| ||||                           
  TCC GGACAAACCAAGG GAACGATTT AAATCGATCGATT    TGAAATC GTGA AATC ATCG                          
AA   G             A         A             ----       A    -    -    ATTTCATGGTTTGTGTAACTGATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850097

TAAGGGCCTGTTTGGTTCCCCTTGCTAAACTTTAGCTAGCTAAAATTATTTTAGCTACTCTTGGGTGACTAATGAGACTAAACTATTTTAGCTCCTTTTAGTCAATGTGTTTGGTACTTTAGCTACTAAAGTGACTAAAGTTTAGCTAGCTAAAATTTAGCAAGAGGAACCAAACAGGGCCTAA

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