SE2830099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9104
  • Sorghum bicolor
  • SE2830099
  • hAT
  • Hat90
  • chromosome_8:51944406-51945100
  • CCAATAAC
  • CAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAATAAC     -- -        ---A        T ------  AGGGGCCGTGGCCCCCCTAACATGTGTCAACAAACATTTTATTAGTATAAATTTATGATTTTTATTTATATTAAGAAAAAATATAACAATTTTTCTTATATATACTTATCAGTATCCTTTAGATAGTAAAATCGTACTCCCTCCATTCTAAATTATAAGTCATTCTATGAATTTTAGAGAGTCCAAGCATCCTAAATTTGACCAAATTTATACAATAAGATAGTAATACTTATGATATCAACTAAGTACCACTAGGTTCTTTATTAATTATATTTTCGCAGTATACCTATTTAATGGTATAAATCTT
        CAGTG  G CGGAGCCA    GGGGGGGC C      GC                                                                                                                                                                                                                                                                                                                   
        |||||  | ||||||||    |||||||| |      ||                                                                                                                                                                                                                                                                                                                    
        GTCAC  C GCCTCGGT    AATGTATA T      GG                                                                                                                                                                                                                                                                                                                   
CAATAACC     AG A        CCTT        - TCTCCC  TTGGTTTTTTTAGGTTGAACAGTTTTGATTCGTATTAGCCGCTGGCGGATCGAACTAAATAGCTGAACTTCATCTACGAGCGTAAAAGATATACATAAAATCCTAGTTTATACAATAAAAAAGCCACCATTTGCAGTGTGGGAATTATCTTTTTTACAAACTCTACTAAAACATTTGGTCGAACTCACTGCGCAGAGATAAAAAGATTCCACAAAGAATCATAATAGATCAATACAAAACATAAGGGAGGTAGGGTTTAATATTTAGTAAGATTCTTAAAACCTCTTAGTTTCATTTTTCTTAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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