SE2850102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9107
  • Sorghum bicolor
  • SE2850102
  • PIF/harbinger
  • To15
  • chromosome_10:11649257-11649919
  • TAA
  • AGAGCATCTCCAACAGTTATGCAATTGGACTTTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA                             C     --ATTCTTTAAA        AAA       --AA    -------------------       CA    T      GA        TTT  G   AC   --------  ATTTGATGGACCAAACTTGGCATTTTTGCATAAGCACAATGACTTGGCAATTTTGATATCCCGAGAATCTTGAACTCCTTGTCGTGCCCGTACTCCCCACGTCGCGGTAGTTTCCCGCGAAACGACTCCTCCCCACGCGCGACTATTTTCTTTCCCCCGCGCGCCGCCTCCTTTTTTCTACGCGTCGCCTTCTTTTTCCCTTG
  AGAGCATCTCCAACAGTTATGCAATTGGA TTTGC            TTTGTCAA   CCTTAAA    TTGC                   TCTCCAA  GTTT GCATTT  CTTATGCA   TG CAA  TTG        GC                                                                                                                                                                                                           
  ||||||||||||||||||||||||||||| |||||            ||||||||   |||||||    ||||                   |||||||  |||| ||||||  ||||||||   || |||  |||        ||                                                                                                                                                                                                            
  TCTCGTAGAGGTTGTCAATACGTTAACTT AAACG            AAACGGTT   GGGATTT    AACG                   AGAGGTT  CAAA CGTAAA  ACTGAACC   GT ATA  GGG        CC                                                                                                                                                                                                           
AA                             T     GTAAACAACCTC        -CA       GCAA    GTTTCCTTTTTATTCAAGT       CA    C      -A        ---  -   --   TTTTATCA  TGGGTTGATAAAAACAGGCTCTTAGAAAGTAGAAGCGCCTTTTAAAAGAGCGCGCAGCGCGCCCGCAGGTAGCGCGCGTTAAGGAAGCGGGCAGCGGCGGTTAAGAGAGCGCGCAGCGGCGAACCAGGTGCAGCTGCGAACCAGGTCCAGCAGCTTTATGCTAGCTCCGTTGTCAGGGTCCGACGTGGCGCCGTAGGTCCAGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End