SE2820106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9111
  • Sorghum bicolor
  • SE2820106
  • Mutator
  • M4
  • chromosome_10:59876632-59877032
  • TTTATACAT
  • GGGAACATATCTAGTGCAAACCACAACCTCCGTGAAAACCTGTGCAAACCATAACAAAAAAAATTGTCTAAATTCATCAAAAAAATCACACATCTAGATGATTTGATGATACACAACATTGTAAAATATATTGTCCAAACTCAACTTTGTTTGTGAGATATAAAAATAACAAATTTCAAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATACAT     C                       C                      A        AA             T A              C        T              A           A            AAC                                A   CAGAAAGGT    A
         GGGAA ATATCTAGTGCAAACCACAACCT CGTGAAAACCTGTGCAAACCAT ACAAAAAA  TTGTCTAAATTCA C AAAAAATCACACAT TAGATGAT TGATGATACACAAC TTGTAAAATAT TTGTCCAAACTC   TTTGTTTGTGAGATATAAAAATAACAAATTTC AGC         GTCC 
         ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||| | |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||| |||         |||| C
         CCCTT TATAGATCACGTTTGGTGTTGGA GCACTTTTGGACACGTTTGGTA TGTTTTTT  AGTAGATTTAAGT G TTTTTTAGTGTGTA ATCTACTA ACTACTATGTGTTG AACATTTTATA AATAGGTTTGAG   AAGCAAACACTCTATATTTTTATTGTTTAAAG TCG         TAGG 
TACATATTT     A                       A                      C        -C             C G              C        T              G           G            CTT                                A   -------TT    A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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