Plant MITE

SE2850107

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9112
Sorghum bicolor
SE2850107
PIF/harbinger
To24
chromosome_6:53871821-53872536
ATA
GGCCCTGTTT

Secondary structure and sequence

TSD TIR

5'

3'

ATA          AGATCCATG      AGTTAGATTTAGCTATTTGGGACTCAAATAGCCCTAAAGTATCCAAATATGAGGGTTAGATTGGGGTTATTTGCATCTAACCCACCCCAAAAAACTATCCCCCCAAAGAGGTGCTTATTTGGGGCTATTTGACGTGGGCCCATAGGAAAAGCGTTGTTTTGCAGCACGGGATCCGCTCTCGTCGTGCGGCCGGTTCCTCTTCATCCCCACGCGCGACACAAACCCGCATTTGCGCCGCCACCTCCCGGGAACTAGTGCCGCCGCCTCTCATCGATGGACGGAGATGGCTTCGACACGTGGGGCTCGCAGCTGTCGTTGAGCGGCTCTGGAC
   GGCCCTGTTT         GGTTAG                                                                                                                                                                                                                                                                                                                                           
   ||||||||||         ||||||                                                                                                                                                                                                                                                                                                                                           T
   CCGGGACAAA         AGATTG                                                                                                                                                                                                                                                                                                                                           
ATA          ---CCAATG      ATTCAATCTCCAATCTCAATAAGAGATCGAGTACTGATCGGGAGTTGATTGAGATCAGTTACTCCACAAACCTACGTTCCCAATCTAACTGTTATTTACATGAAAAGATTAGTAAATCGAGAAAGGGTCGGCCTAAACCACACCGGCCGACAACTCACCGGAGGAGCGCGAGTACCGAGGCCGAGCGCCACCCGCTATCCCTCCCTCCGACCTCGGGGAGTGCGCCGATCCCTCCTCGAGCAACGGCAGCGGGACCTCCTACCGAGATATTTCGGGTTCGGAACCCTTGGGGAGGTGGCTACCGCGAACGCTCAACTCCAACTCTAGGCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850107

ATAGGCCCTGTTTAGATCCATGGGTTAGAGTTAGATTTAGCTATTTGGGACTCAAATAGCCCTAAAGTATCCAAATATGAGGGTTAGATTGGGGTTATTTGCATCTAACCCACCCCAAAAAACTATCCCCCCAAAGAGGTGCTTATTTGGGGCTATTTGACGTGGGCCCATAGGAAAAGCGTTGTTTTGCAGCACGGGATCCGCTCTCGTCGTGCGGCCGGTTCCTCTTCATCCCCACGCGCGACACAAACCCGCATTTGCGCCGCCACCTCCCGGGAACTAGTGCCGCCGCCTCTCATCGATGGACGGAGATGGCTTCGACACGTGGGGCTCGCAGCTGTCGTTGAGCGGCTCTGGACTCGCGGATCTCAACCTCAACTCGCAAGCGCCATCGGTGGAGGGGTTCCCAAGGCTTGGGCTTTATAGAGCCATCCTCCAGGGCGACGGCAACGAGCTCCTCCCTAGCCGCGTGAGGGGCTCCAGCCTCCCTCCCTATCGCCCACCGCGAGCCGGAGCCATGAGCGCGAGGAGGCCACTCAACAGCCGGCCACACCAAATCCGGCTGGGAAAGAGCTAAATGATTAGAAAAGTACATTTATTGTCAATCTAACCCTTGCATCCAAACACCTCATTGACTAGAGTTAGTTGAGGGCTAGTCATGAGCTAGAGAATAACTCTAACCTCTAACTTAGTTAGAGTAACCAAACAGGGCCATA

Copy Cancel