Plant MITE

SE2810110

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9115
Sorghum bicolor
SE2810110
Tc1/Mariner
St6
chromosome_1:69639816-69640076
TA
TACTCCCTCCGTCCCTGAAAGCTGCAATTTCTAGAGTT

Secondary structure and sequence

TSD TIR

5'

3'

                       G              GTCTTA      T   TTAA            A           AAACA    GATTTA    ACCAAATTAATACCATTAGATTTATCATTGAA
TACTCCCTCCGTCCCTGAAAGCT CAATTTCTAGAGTT      AGTCAA TTT    AACTTTGACCAA TTTATAGAAAA     CTAA      TAGT                                
||||||||||||||||||||||| ||||||||||||||      |||||| |||    |||||||||||| |||||||||||     ||||      ||||                                T
ATGAGGGAGGCAGGGACTTTCGA GTTAAGGATCTTAG      TCAGTT GAA    TTGAAACTGGTT AAATATCTTTT     GTAG      ATAC                                
                       A              GCACGG      T   CAAA            G           --CTC    ----TT    ATATTGTATTTTACTCATAGAATACTTTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810110

TACTCCCTCCGTCCCTGAAAGCTGCAATTTCTAGAGTTGTCTTAAGTCAATTTTTTAAAACTTTGACCAAATTTATAGAAAAAAACACTAAGATTTATAGTACCAAATTAATACCATTAGATTTATCATTGAATATATTTTCATAAGATACTCATTTTATGTTATACATATTGATGCTCTTTTCTATAAAGTTGGTCAAAGTTAAACAAGTTTGACTGGCACGGATTCTAGGAATTGAAGCTTTCAGGGACGGAGGGAGTA

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