SE2850112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9117
  • Sorghum bicolor
  • SE2850112
  • PIF/harbinger
  • To2
  • chromosome_6:47710877-47711125
  • TAT
  • GGCCTTGTTTAGTTCCGAAAAATTTTGGGAAATGGACAC

Secondary structure and sequence

TSD    TIR
5'



3'
TAT           G    G -         G     -GGA   TGTAGCACTTTC         T    - ATATTGTCCAATCATGAACTAACTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAA
   GGCCTTGTTTA TTCC A AAAATTTTG GAAAT    CAC            GTTTGTATT GACA A                                                           
   ||||||||||| |||| | ||||||||| |||||    |||            ||||||||| |||| |                                                           A
   CCGGAACAAAT AAGG T TTTTAAAAC TTTTA    GTG            AGGGGCAGT GTAG T                                                           
TAT           G    G C         G     AAAA   ----------TA         -    C TAGAAATCTGCGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAACGTGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End