Plant MITE

SE2850116

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9121
Sorghum bicolor
SE2850116
PIF/harbinger
To2
chromosome_1:69946339-69946587
TAA
AGGCCCTGTTTACTTCCCAGAAAATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA     C      C    CA          C     TTTT   -------------ATTCCC    ACATCG ----       GA ACATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTACACAGT
  AGGCC TGTTTA TTCC  GAAAATTTTG AAAAT    CAC                   CGTC      A    ATCTTTA  C                                                  
  ||||| |||||| ||||  |||||||||| |||||    |||                   ||||      |    |||||||  |                                                   
  TCCGG ACAAAT AAGG  TTTTTAAAAC TTTTA    GTG                   AAAC      T    ATAACAG  G                                                  
AA     A      C    -C          C     -CCT   ACATCATAAAAGCAAACAT    ------ GTTT       -- TTAGTACCTGATTTATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850116

TAAGGCCCTGTTTACTTCCCAGAAAATTTTGCAAAATTTTTCACATTCCCCGTCACATCGAATCTTTAGACACATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTATTTAGTCCATGATTGGACAATATTTGTCAAATACAAACGAAAATACTACAGTGTCCATTTTCCAAAATTTTTCGGAACTAAACAAGGCCTAA

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