Plant MITE

SE2850117

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9122
Sorghum bicolor
SE2850117
PIF/harbinger
To26
chromosome_3:72646356-72646588
TTA
AGGCCTTGTTTAGATGCGAAAAGTTTTTGGATTTCGCTATTGTAGCACAT

Secondary structure and sequence

TSD TIR

5'

3'

TT             ---  G G     -     G --  T   -CTA    A      T  TTTGTTTGTGGCAAATATTGTTCAATTATGAACTAACTAGGATCAAAAGATTCGTCTC
  AGGCCTTGTTTAG   AT C AAAAG TTTTT G  AT TCG    TTGT GCACAT TG                                                          
  |||||||||||||   || | ||||| ||||| |  || |||    |||| |||||| ||                                                          G
  TCCGGAACAAATC   TG G TTTTC AAAGG C  TG AGC    AACG CGTGTA CG                                                          
AT             AAG  G G     T     G AG  T   TTAG    C      -  TATTTCGTAATATATATTTATATTTGTTTTTGATTAATGTGTCAAATGGACATTTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850117

TTAGGCCTTGTTTAGATGCGAAAAGTTTTTGGATTTCGCTATTGTAGCACATTTGTTTGTTTGTGGCAAATATTGTTCAATTATGAACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAGGTAAACTGTGTAATTAGTTTTTGTTTATATTTATATATAATGCTTTATGCATGTGCCGCAAGATTCGATGTGACGGGAAATCTTTTGGGGTGAACTAAACAAGGCCTTA

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