SE2850119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9124
  • Sorghum bicolor
  • SE2850119
  • PIF/harbinger
  • To1
  • chromosome_9:8222339-8222587
  • TAA
  • AGGTCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            -    ACCCCAAAAACCAAAAACTTTTTAAAATTTC   TCACATCGAATCTTGCGGCACATGCATGATGCATTAAATATAGATGGAAACAAAAACTAATTACACAGTCCGTTTGTAAATCACGAG
  AGGTCTTGTTTA GTTC                               TCG                                                                                       
  |||||||||||| ||||                               |||                                                                                        
  TCCGGAACAAAT TAGG                               TTT                                                                                       
AA            G    ------------------------------C   TAAAAAACCTAAGATTGTGACATCGTGAAAGCAAAAATAAATTGTTTGTAACAAGTTAGTGTCTCGATGATCCGAATTTTCTAAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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