SE2850120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9125
  • Sorghum bicolor
  • SE2850120
  • PIF/harbinger
  • To10
  • chromosome_2:56382917-56383061
  • TAA
  • AGGCTTTGTTTGGATGTAGTCGGATTCACATCAATCCACATGTGTTGAGGTGGATTGGAGTGGAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 A           A        CA       AG         A      C  GAA
  AGGCTTTGTTTGGATGT GTCGGATTCAC TCAATCCA  TGTGTTG  GTGGATTGG GTGGAA TT   
  ||||||||||||||||| ||||||||||| ||||||||  |||||||  ||||||||| |||||| ||    
  TCCGGAACAAACCTACA CAGCCTAAGTG AGTTAGGT  ACACAAC  CACCTAACT CACCTT AA   
AA                 A           A        AC       CA         C      -  ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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