Plant MITE

SE2830121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9126
Sorghum bicolor
SE2830121
hAT
Hat1
chromosome_2:67725352-67725534
TTTACACC
CAGGGGCGAAGGTAAGTAGTTTGTAGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTACACC   G       G  -     -    -TA   -     TAATGCACCACCCAAAAAATATAAAAACAGTGAGATTGATTAAAATTT
        CAG GGCGAAG TA AGTAG TTTG   GTG GGTGC                                                
        ||| ||||||| || ||||| ||||   ||| |||||                                                C
        GTC CCGCTTC AT TCGTT AAAC   CAC ACGTG                                                
CCACATTT   A       G  C     T    TCC   C     AACGGAACACCCACGTATTTGTACAGATGACTCCCCACGTATATACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830121

TTTACACCCAGGGGCGAAGGTAAGTAGTTTGTAGTGGGTGCTAATGCACCACCCAAAAAATATAAAAACAGTGAGATTGATTAAAATTTCACCATATATGCACCCCTCAGTAGACATGTTTATGCACCCACAAGGCAAGTGCACCACCCTCAAATTTGCTCTAGCTTCGCCACTGTTTACACC

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