SE2850125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9130
  • Sorghum bicolor
  • SE2850125
  • PIF/harbinger
  • To1
  • chromosome_2:13169758-13170006
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TT                ACTCCGAAATCCA         CAA    CCC      ATCGAA  T    GCACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGTAAAT
  AGGCCTTGTTTAGTTC             AAAAGTTTT   GATT   CGTCAC      TC TGCG                                                                
  ||||||||||||||||             |||||||||   ||||   ||||||      || ||||                                                                C
  TCCGGAACAAATCAAG             TTTTTAAAA   CTAA   GCGGTG      TC GTAA                                                                
AT                -----------AC         -AC    --A      ---ATA  -    AAGCAAAAATAAACTGTTTATAATAGGTTAGTACTTGATGGATCCTAGTTTTCTAAGCAGAGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End