SE2850126

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9131
  • Sorghum bicolor
  • SE2850126
  • PIF/harbinger
  • To14
  • chromosome_10:33519140-33519386
  • TAA
  • AGGCCTTGTTTAGTTCCAAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G   C      AT          TTTTC   -   TCTATTACATCGAATTTTACGGCACATGCATGGAGCACTAAATATAGATAAAAGAAATAACTAATTACACAGTTTATC
  AGGCCTTGTTTA TTC AAAAAT  TTTGCAAAAT     AAA TTC                                                                              
  |||||||||||| ||| ||||||  ||||||||||     ||| |||                                                                              T
  TCCGGAACAAAT AAG TTTTTA  AAACGTTTTA     TAC TAT                                                                              
AA            G   A      --          -----   T   CATCGCAAAAGCAAACATAAACTATTTATAACAGGTTAATACCTGATTAATCTGAGTTTTCTAGTAGAGCGTTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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