Plant MITE

SE2850127

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9132
Sorghum bicolor
SE2850127
PIF/harbinger
To1
chromosome_6:57575575-57575822
TTA
AGGGCTTGTTTAGATCCAAAAACTTTTTGGATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT   G           ---          TTT           C   AGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTTACAG
  AGG CTTGTTTAGAT   CCAAAAACTT   GGATTTTGACA TGT                                                                               
  ||| |||||||||||   ||||||||||   ||||||||||| |||                                                                                
  TCC GAATAAATCTA   GGTTTTTGGG   TTTGAAATGTT CTA                                                                               
AT   G           TAT          --T           -   AGGGGTAATGTAGCTTAGAACGCCATGTACGTACCTCGTAATTTATATCTATTTTTATTTTTGATTAATGTGTCAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850127

TTAGGGCTTGTTTAGATCCAAAAACTTTTTGGATTTTGACACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGTAATTAGTTTTTATTTTTATCTATATTTAATGCTCCATGCATGTACCGCAAGATTCGATGTAATGGGGAATCTTGTAAAGTTTTGGGTTTTTGGTATATCTAAATAAGGCCTTA

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