SE2850129

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9134
  • Sorghum bicolor
  • SE2850129
  • PIF/harbinger
  • To1
  • chromosome_2:5122346-5122594
  • CTG
  • GGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CT            -     - -----    ---------  GAAAAGTTTTCGGAACTGTAGCACTTTCGTTTTTATTTGACAAATATTATCCAATCATAGAGTAACTAAGCTTAAAAGATTTATCTCGTG
  GGGCCTTGTTTA GTTCC G     AAAA         CT                                                                                          
  |||||||||||| ||||| |     ||||         ||                                                                                          A
  CCCGGAACAAAT AAGTA G     TGGT         GT                                                                                          
GT            C     G GTTTT    TTTAGAAAA  TCTAAGGGGCAGTGTAGCTTAGAACGCCATGTATGTACTTTATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAATGGACATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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