Plant MITE

SE2850130

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9135
Sorghum bicolor
SE2850130
PIF/harbinger
To2
chromosome_2:64169377-64169963
TAA
GGGCCTGTTTAGATTGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TAA      -      -A      -----A   AAA             ACGTCGGATATGTCGGAAGGATGTCGGGTGGGGTTTTTAGAAACTAATAAAAAAACAAATTACATAGCTCGTCAGGAAACTGCAAGACAAATTTATTAAGCATAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTAAGGCTAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTCTCAACTAAACTGTGTAATTAGTTTATTTTTTTATCTACATTTAATGTTCCATACATG
   GGGCCT GTTTAG  TTGGAA      CGA   TTTTTTGCGTGTC                                                                                                                                                                                                                                                         
   |||||| ||||||  ||||||      |||   |||||||||||||                                                                                                                                                                                                                                                          
   TCCGGA CAAATC  GATTTT      CGT   TACTCGTGACATC                                                                                                                                                                                                                                                         
 AA      A      AA      AAAAAC   -TT             GTCAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTGGTTTGACACGTTAATCAAAAATAAAAATAGATATAAATTATGAAGTACGTATGTAGATTTCTAAGCTACACTGCCCCTTAGACTTTTTAAAACGTTTTAAAAACCCCTTGATTTGTTCCGGAATCAAGGAGCAGGTTTTTAAAAAGTAGGTAGGGTAGCTTAGAAACCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850130

TAAGGGCCTGTTTAGATTGGAAACGAAAATTTTTTGCGTGTCACGTCGGATATGTCGGAAGGATGTCGGGTGGGGTTTTTAGAAACTAATAAAAAAACAAATTACATAGCTCGTCAGGAAACTGCAAGACAAATTTATTAAGCATAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTAAGGCTAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTCTCAACTAAACTGTGTAATTAGTTTATTTTTTTATCTACATTTAATGTTCCATACATGTGTCCAAAGATTCGATGGGATGGATGAAAAATTTTTGGACGAGGAACTAAGGCCTTGTTTAGTTCCCCAAAAATTTTGCAAAATTTTTCAGATTCCCCGTCACATCGAATCTTTAGATGTATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATTGGACAATATTTGTCAAATACAAACGAAACTGCTACAGTGCTCATTTTGCCAAAAATTTTAGAACTAAACAAGGCCTAA

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