SE2850131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9136
  • Sorghum bicolor
  • SE2850131
  • PIF/harbinger
  • To28
  • chromosome_6:6738599-6739052
  • TAT
  • GGGGCTGTTTGGTTGCTTGCATCTGGTGGGACCAGGCT

Secondary structure and sequence

TSD    TIR
5'



3'
TAT              -  -TT   TCT  T   A       -----  CCAGATGCAGGGCAGTCTTGTTTGGTTGACTGCTTACGCCATTGAGCCAGGCTCTAGCCATGCAGAAAGGAGGCCGTGGCTAGGCTCTGCACGAACCCCAGAATCGGCCGTTTCTGCCGGGCCAGGCTCGCTGGCTGCACGAGTTAGTTTGTTTAATGATGTATTAGTGTATGATTAGTAAA
   GGGGCTGTTTGGTT GC   GCA   GG GGG CCAGGCT     GG                                                                                                                                                                                      
   |||||||||||||| ||   |||   || ||| |||||||     ||                                                                                                                                                                                      T
   CCCCGACAAACCAA CG   CGT   CC CTC GGTCCGA     CC                                                                                                                                                                                      
TAT              G  CAT   ---  T   -       GTATA  CTGTAGGACTCCTCTACGTTGTGTCAGCACAAACTAACTGACATAGATAAGTCAGACCGACTCTTCTCTATTTTTTTTCTTTCATTACTAATACTAAAAATAAAAAATGTTTATACGAGATTTTTAAGAACAAATAGATTAATATAGAATTTGTAGAAATTTTGTATAATTATAGTGAACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End