SE2830132

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9137
  • Sorghum bicolor
  • SE2830132
  • hAT
  • Hat11
  • chromosome_3:13389394-13389558
  • GTTTAGTT
  • TTAGTTTAGGGGTGCAAAGGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GT    T             G    AACCT             C                                AA  GTT
  TTAG TTAGGGGTGCAAA GGGT     TTAGGTGCACCTC AAACCTCTTTAGTTCAAATATTTGTACTACTT  TT   
  |||| ||||||||||||| ||||     ||||||||||||| ||||||||||||||||||||||||||||||||  ||    
  GATT GATCCCCACGTTT CTCA     AATCCACGTGGAG TTTGGAGAAATCAAGTTTATAAATATGATGAA  AG   
TT    T             A    CTACT             A                                -G  GTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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