SE2850136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9141
  • Sorghum bicolor
  • SE2850136
  • PIF/harbinger
  • To26
  • chromosome_10:7268124-7268365
  • CTA
  • GGCCTTGTTTAGTTCCGAAAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA              --  G      ---------TTT        TAGCACTTTCGTTTGTTTGTGACAAATATTATCCAATTATAGACTAATTAGAATCAAAAGATTAGTCTCACGATTTCC
   GGCCTTGTTTAGTT  CC AAAAGA            CGGTACTG                                                                              
   ||||||||||||||  || ||||||            ||||||||                                                                              A
   CCGGAACAAATCAA  GG TTTTTT            GTTCTAAA                                                                              
ATC              GT  G      CGTTTTTCAAAA        AGGTAGTGTAGTTTAGAACGCCGTGTACGTAATTCGTAATTTATATCTGCTTTCATTTTTGATTATTGTGTCAAATCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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