SE2850139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9144
  • Sorghum bicolor
  • SE2850139
  • PIF/harbinger
  • To29
  • chromosome_3:65279410-65279622
  • TTA
  • AGGCCTTGTTTGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   CCT      G   ---CAAG   A            ---------  -       CAGTTT TTGAATCCAAACAAGTCTAGCTAATAATTTAGCTAATTATTAGCTGAAT
  AGG   TGTTTG ATC       TAG TAGTAGTTAGCT         GC TAATAAT      C                                                 
  |||   |||||| |||       ||| ||||||||||||         || |||||||      |                                                  
  TCC   ACAAAC TAG       ATC ATTATCAATCGA         CA TGTTGAT      A                                                 
AT   CTT      G   ATAGATA   G            ACTATTATC  G       ------ ATATATCGACGATGAAACCAAATTGATCACTTTATCGATAATCAACTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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