Plant MITE

SE2850145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9150
Sorghum bicolor
SE2850145
PIF/harbinger
To27
chromosome_9:56508961-56509582
TTA
AGAGCAACTCCAACCATTATGC

Secondary structure and sequence

TSD TIR

5'

3'

TT      A               ----      - CT     TTTAC AAAATGCATAAAACTCCAAAAAAACCGCTCCAATCATTATGCATTTGGACTTTGCATTTTACATAGCTATGCATTTGGAGAGAGAAACTTGGCATATATGCCAAAGGAGTCCGGCTATGCAAATAGAGATCACGGGATTCTCGGTTCCACCTCGCAGGCTTTTTTCTTCCCTTCGCGCGGTTTCCCTTCGCGCCGCCACCACTTCGCGCGATAAGAGAAGCATCGCGCATCCTCCTTCGCCAGCTTCGCGCGCGCGTTTGGACGAAGC
  AGAGCA CTCCAACCATTATGC    AAATGG A  TGGCA     C                                                                                                                                                                                                                                                                            
  |||||| |||||||||||||||    |||||| |  |||||     |                                                                                                                                                                                                                                                                             
  TCTCGT GAGGTTGGTAATACG    CTTCAA A  CGTAA     A                                                                                                                                                                                                                                                                            
AT      A               TAAA      T --     ----- ATCCGTTTAACGTTTGGGGGTTTACTTTTACCGTTCCGATTTTAGCCCACTAGAGGTTGGCAATACGTTTTACGATTCAGATAGTAGAAAAAAAAGAGCTTTTAAAACAAAGCGCCGTGAGGAAGGGCGCGCCGGTTAGCTAGGGCGCGGTTTGTCGGGCGGCAGCAGAGGGCAAGTGGTAACTACTTCTTCCGCATGGATCGGCCGCAACTACTCCTTCCGCAGCATCTAAGCAGGATAGCGCGCGACGTAGCAGGATAACACGCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850145

TTAGAGCAACTCCAACCATTATGCAAATGGACTTGGCATTTACCAAAATGCATAAAACTCCAAAAAAACCGCTCCAATCATTATGCATTTGGACTTTGCATTTTACATAGCTATGCATTTGGAGAGAGAAACTTGGCATATATGCCAAAGGAGTCCGGCTATGCAAATAGAGATCACGGGATTCTCGGTTCCACCTCGCAGGCTTTTTTCTTCCCTTCGCGCGGTTTCCCTTCGCGCCGCCACCACTTCGCGCGATAAGAGAAGCATCGCGCATCCTCCTTCGCCAGCTTCGCGCGCGCGTTTGGACGAAGCAGCGCACAATAGGACGATGCAGCGCGCGATAGGACGAATCTACGACGCCTTCCTCATCAACGCCGGCTAGGTACGCCTTCTTCATCAATGGTGAACGGGAGACGACGGCGGGCTGTTTGGCGCGGGATCGATTGGCCGCGCGGGAAGGAGTGCCGCGAAACAAAATTTTCGAGAAAAAAAAGATGATAGACTTAGCATTTTGCATAACGGTTGGAGATCACCCGATTTTAGCCTTGCCATTTTCATTTGGGGGTTTGCAATTTGCCTAAAATGCATAACTTCAAATGCATAATGGTTGGAGATGCTCTTA

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