SE2850146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9151
  • Sorghum bicolor
  • SE2850146
  • PIF/harbinger
  • To30
  • chromosome_5:51849406-51849698
  • TTA
  • AGAGCAACTCCAAGAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  TTGATAAAAAT  A GGCTAAATTCAAGATTTAGCCAACCTATAAAATAGAAAATCATGCAAAAAAACAAAAATCTCCAACAGTCTTTCTAATACGGCAAATCATATGACTACCGGGACATGCAAGCTA
  AGAGCAACTCCAAGAGAG           GG T                                                                                                                  
  ||||||||||||||||||           || |                                                                                                                   
  TCTCGTTGAGGTTCTCTT           GG T                                                                                                                  
AT                  ----CTCGATA  - ACAATACATAAGATATAAACCGATAAAACCCTCTCTTTTCTTTCAGGTTGTCGATAACATAAACCAAACGATTTTATCGTTCAGTAGATAGGGCCTCAAGAGCGTACTATTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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