Plant MITE

SE2850149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9154
Sorghum bicolor
SE2850149
PIF/harbinger
To2
chromosome_3:65294784-65295032
TGA
AGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TG            C    ACCCAAA    C     T    -   -     --   --   CATCGAATCTTTAGACGCATGCATGAAATACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTG
  AGGCCTTGTTTA TTCC       AACG AAAAT TTTC AAG ATTCT  CCG  TCA                                                                     
  |||||||||||| ||||       |||| ||||| |||| ||| |||||  |||  |||                                                                     G
  TCCGGAACAAAT AAGG       TTGC TTTTG AAAG ACT TGACA  GTG  AGC                                                                     
AG            C    -----AC    -     T    C   G     TC   AA   AAACAAACACTATTAATAACAAGCTGATACCTTATTGATCGGAGTTTTCTAAGCAGAGCAGTTAAAGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850149

TGAGGCCTTGTTTACTTCCACCCAAAAACGCAAAATTTTTCAAGATTCTCCGTCACATCGAATCTTTAGACGCATGCATGAAATACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGGCTAGTTATTCCATAGTCGAACAATAATTATCACAAACAAACGAAAGTGCTACAGTGTCACGAAATGTTTTCGTTCAGGAACTAAACAAGGCCTGA

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