SE2850151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9156
  • Sorghum bicolor
  • SE2850151
  • PIF/harbinger
  • To3
  • chromosome_1:71165286-71165536
  • TGA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG               GA       AAA  --- TTTTGGGTACTGTAGCACTTTCATTTTTATTTGGTAATTATTGTCCAACCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACAGGC
  AGGCCTTGTTTAGTT  GGAGGTG   AG   T                                                                                              
  |||||||||||||||  |||||||   ||   |                                                                                              A
  TCCGGAACAAATCAA  GTGAGGT   TT   G                                                                                              
AG               --       ---  TGG TTTTTGAAAAGTTCTAAGGGACAATGTAGCTTAGAACGCCGTGTACGTACCTTGTAATTTATATCTAATTTTTTTTTATTGATTAACGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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