Plant MITE

SE2850152

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9157
Sorghum bicolor
SE2850152
PIF/harbinger
To4
chromosome_3:62823853-62824090
TAA
AGGCCTTGTTTAGTTGGCAAAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA               G      T   --    TTTTGGCTACTGTAGCACTTTCGTTTTTATTTGATAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAA
  AGGCCTTGTTTAGTT GCAAAA TTT  GGCT                                                                                      
  ||||||||||||||| |||||| |||  ||||                                                                                       
  TCCGGAACAAATCAA CGTTTT AAA  TTCT                                                                                      
AA               G      T   AG    AAGGGGCAGTGTAGCTTAGAAACCAATGTACGTACCTCGTAATTTATTTCTATTTTTATTTTTGATTAATGCGTCAAATGGACTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850152

TAAGGCCTTGTTTAGTTGGCAAAATTTTGGCTTTTTGGCTACTGTAGCACTTTCGTTTTTATTTGATAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTTCAGGTAAACTGCGTAATTAGTTTTTATTTTTATCTTTATTTAATGCTCCATGCATGTAACCAAAGATTCGATGTGACGGGGAATCTTGAAAATTTTTGCGAACTAAACAAGGCCTAA

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