SE2810159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9164
  • Sorghum bicolor
  • SE2810159
  • Tc1/Mariner
  • St3
  • chromosome_7:10448701-10449173
  • TA
  • TACTCCCTCCATACCCAAATTAGCTGACGTTTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
               C       C       -    ----ACATGA     C      AG    - ATTAATT     GTATTTTTCTCTGTCTACCCCTATTAAATAAGGTGTCGGGTGCAGTCCTCATAATAAAGCTACTCAGCTCAAATGGTTAGTGCAGTAAGGCTGTAGGGTGGTGTGCAGTGTTCGACTCGTGGTGACCACAAGTTTTTGCGGAGGTTTTGGTTTTGCCTGTATGGCT
TACTCCCTCCATACC AAATTAG TGACGTT TAGG          TTGTG TTACCA  GAGT C       AGAAG                                                                                                                                                                      
||||||||||||||| ||||||| ||||||| ||||          ||||| ||||||  |||| |       |||||                                                                                                                                                                      G
ATGAGGGAGGTATGG TTTAATC ACTGCAG ATCC          TAAAA GCGTTT  TAAC G       GAACG                                                                                                                                                                      
               A       A       G    GAGTTACAGA     -      --    G -------     GACAACGCGAGCGGTTGAGGAACGAAGTGAGCATTAATTAACACAGCGGAGCTAACCGAAGCAGTGCGTGGGTTAGTCGCGAGCGCTTCGTCAGGTTTGCAGGGTCGCGTGCGGTCGGGTACGGCGTACGCCGAGTCGCGCGTGTGCGGGTCGGCTTTGCCTGGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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