SE2810160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9165
  • Sorghum bicolor
  • SE2810160
  • Tc1/Mariner
  • St9
  • chromosome_7:2830068-2830330
  • TA
  • TACTCCCTCCATTCCAAATTATAAGACATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAAATTATAGAGAGAATTAAAAAGATTTATGACATCAAATAGGTATACTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A     C                    GC              C   AT   -A  -    AT   A  G        C             -----------------      AA
TACTCCCTCCATTCCAAATTATAAG CATTC AAGAATCTTGGAGAGTCAAA  ATCTCAAGTTTGAC AAA  TAT  GA GAGA  TAA AA ATTTATGA ATCAAATAGGTAT                 ACTATA  
||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||| |||  |||  || ||||  ||| || |||||||| |||||||||||||                 ||||||   
ATGAGGGAGGTAGGGTTTAATATTC GTAAG TTCTTAGAACCTTTCAGTTT  TAGAGTTCAAACTG TTT  ATA  CT TTCT  ATT TT TAAATACT TAGTTTATTTATA                 TGATAT  
                         A     A                    GT              A   GT   CA  A    --   A  G        A             GTAGTCTAAGAAATAAT      AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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