SE2850163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9168
  • Sorghum bicolor
  • SE2850163
  • PIF/harbinger
  • To14
  • chromosome_2:57214094-57214337
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               TCATTTTTT      --------A    - CATTGTAGCATTTCCGTTTGTATTTGACAAATATTGTATAATCATAGACTAACTACGCTCAAAAGATTCGTCTCGCTAA
  AGGCCTTGTTTAGTT         TTGCAA         ATAG A                                                                               
  |||||||||||||||         ||||||         |||| |                                                                               T
  TCCGGAACAAATCAA         AACGTT         GTTA A                                                                               
AA               TTTTTTTTT      AAAAAAAGT    G GGCAGTGTAACTTAGAATATCGTGTATGTACATCGTGATTTATATCTATTTTTGATTGATTAATATATCCAATGGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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