SE2850165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9170
  • Sorghum bicolor
  • SE2850165
  • PIF/harbinger
  • To31
  • chromosome_8:4077777-4078062
  • TTA
  • AGGGCCTGTTTAGATTTGAAATTTTTTGGCCCAAAGAGAAAAATTTTTGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G                         CC     --AG              A -         GAGAACTAAACGGGGCCAAAAAATTTTGGGGCCAAAATTTTGGGCTACAACTATGCACGCACTCCCATGGAAGCCCA
  AGG CCTGTTTAGATTTGAAATTTTTTGG  CAAAG    AAAAATTTTTGTGG A TTGGGGCCT                                                                             
  ||| |||||||||||||||||||||||||  |||||    |||||||||||||| | |||||||||                                                                             C
  TCC GGACAAATCTAAACTTTAAAAAACC  GTTTC    TTTTTAAAAACACC A GTTGCGTGC                                                                             
AT   G                         -A     ACCA              - G         GCTTTTTAAAATCCACAAATCAAACAGTTTAAAAAAAGACTGTGTTGAACCCAACGTACGTCAACGTCAACAGTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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