SE2850166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9171
  • Sorghum bicolor
  • SE2850166
  • PIF/harbinger
  • To12
  • chromosome_3:8604216-8604465
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACCC       CAAAAAGTTTTTAAGATTCCCTATCACATCGAATCTTGTGGCACATGCATGAAACATTAAATATAGACGAAAACAAAAAACTAATTACACAGTTTAGC
  AGGCCTTGTTTAGTTC    TGAAAAC                                                                                                  
  ||||||||||||||||    |||||||                                                                                                   
  TCCGGAACAAATCAAG    GCTTTTC                                                                                                  
AT                ----       ACTTTTGAAAAGCCATGACATCGTGAAAGCAAACAAACACTGTTTATAATAGATTAGTATTCGATTGATCCTAATTCTCTAAGCAGAGCACTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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