Plant MITE

SE2850167

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9172
Sorghum bicolor
SE2850167
PIF/harbinger
To4
chromosome_4:65811608-65811842
TAT
GGCCTTGTTTAGTTTGCATTTTTTTGGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TAT               ----GC      TT      --     CTGTAGCACTTTCGTTTGTATATGACAATTATTGTCCAACCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCA
   GGCCTTGTTTAGTTT      ATTTTT  GGTTTT  TGCTA                                                                           
   |||||||||||||||      ||||||  ||||||  |||||                                                                           A
   CCGGAACAAATCAAG      TAAAAG  CTAAGG  TGGTG                                                                           
TAT               GTTTTT      TT      GG     TAGCTTAGCACACCGTGTACGTACCTTGTAATTTATATCTAATTTTTTATTGATTAATGTGTCAAACGGATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850167

TATGGCCTTGTTTAGTTTGCATTTTTTTGGTTTTTGCTACTGTAGCACTTTCGTTTGTATATGACAATTATTGTCCAACCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTATAGGCAAACTGTGTAATTAGTTATTTTTTAATCTATATTTAATGTTCCATGCATGTGCCACACGATTCGATGTGGTGGGGAATCTTGAAAATTTTTTGGAACTAAACAAGGCCTAT

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