Plant MITE

SE2810170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9175
Sorghum bicolor
SE2810170
Tc1/Mariner
St9
chromosome_9:48039648-48039911
TA
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATTTTCACGTTTGACCAAAATTATA

Secondary structure and sequence

TSD TIR

5'

3'

                                                    G A     -AC           A     GAGAGAA     AAGA     AACATAAAGTGAGTATACTATGAAAATATAATTAA
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAA C TTTTC   GTTTGACCAAA TTATA       ATACT    TTTAT                                   
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||   ||||||||||| |||||       |||||    |||||                                   G
ATGAGGGAGGTAGGGTTTAACATTCAGTAAGGTTCTTAGAACCTCTCAGTTT G AAAAG   CAAACTGGTTT AATAT       TATTT    TATTA                                   
                                                    - -     ATT           A     -----AC     -AAT     ATAATACTATGGTTGATTCATAGTAATCTAAGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810170

TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATTTTCACGTTTGACCAAAATTATAGAGAGAAATACTAAGATTTATAACATAAAGTGAGTATACTATGAAAATATAATTAAGGAAGAATCTAATGATACTTAGTTGGTATCATAATAATTATTAATTTATCATATAAATTTGGTCAAACTTAGAAAAGTTTGACTCTCCAAGATTCTTGGAATGACTTACAATTTGGGATGGAGGGAGTA

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