SE2810173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9178
  • Sorghum bicolor
  • SE2810173
  • Tc1/Mariner
  • St9
  • chromosome_1:73591887-73592149
  • TA
  • TACTCCCTCCATCCCAAATAATAAGTCATTCCAAGAATCTTGGAGAGTCAAACCATCTTAAGTTTGACGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
                   AA                 C  G          C        G      G   TTTA     TA   -TA    -T              C TA    C  TACATTGTTCATT
TACTCCCTCCATCCCAAAT  TAAGTCATTCCAAGAAT TT GAGAGTCAAA CATCTTAA TTTGAC AAA    TATGG  AGA   ATAA  ATTTATGGTATCAA T  GTAT AT             
|||||||||||||||||||  ||||||||||||||||| || |||||||||| |||||||| |||||| |||    |||||  |||   ||||  |||||||||||||| |  |||| ||             A
ATGAGGGAGGTAGGGTTTA  ATTCAGTAAGGTTCTTA AG CTCTCAGTTT GTAGAGTT AAACTG TTT    ATATC  TCT   TGTT  TAAATATTGTAGTT A  CATA TA             
                   AC                 C  A          C        G      G   --TA     TC   TAA    TC              T TC    T  TACTTTTATATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End