SE2850176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9181
  • Sorghum bicolor
  • SE2850176
  • PIF/harbinger
  • To4
  • chromosome_9:49549150-49549395
  • TTA
  • AGGCCTTGTTTAGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CCAA              ----------------------ATTTTCA   T        -  TCTAATATTGTGATACATACATGGAGCATTAAATATAGATAAAAGAAATAACTAATT
  AGGCCTTGTTTAGTTG    AAGAATTTGCAAAA                             GAT CTCCGTCA TA                                                         
  ||||||||||||||||    ||||||||||||||                             ||| |||||||| ||                                                          
  TCCGGAACAAATCAAT    TTTTTAAATGTTTT                             CTG TTTATAAC GA                                                         
AT                ----              ACCTATAACATCGTGAAAACAAATATAAA   -        A  TTAGTACCTGATTAATCCGAATTTTATAAGCAGAGTGTTTAATGTCCATTTGATACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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