SE2850177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9182
  • Sorghum bicolor
  • SE2850177
  • PIF/harbinger
  • To9
  • chromosome_1:65875425-65875796
  • TTA
  • AGAGCATCCCCAACCGTTTGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   G   ----AA         -  TTCATGTATTTGCAAAAAAGTCTAAAAAACACCTATTCAACGGTTTGGCAATTGGGCTTTGCAATTTTGTTAACTTGGCAAATAGAGGGGAAGGACTTCCATATATGCCAAGCCCCTCCGCGCTTGGCATCGCGTCCCTCGCGCG
  AGAGCATCCCCAACCGTTT GCA      TAGGCTTTG CA                                                                                                                                                 
  ||||||||||||||||||| |||      ||||||||| ||                                                                                                                                                 A
  TCTCGTAGGGGTTGGCAAA CGT      CAAACCGTT AC                                                                                                                                                 
AT                   A   ATCAAG         T  TCCCTCAAACGGTTCAGGATTTATTTATATTGTTTTCACTTTTCTCCGTTAGAGGTTACCAAACCGTAATTAGTGAACCGTTTTTTCTTTTAGACCACCGCCCTCCTCCCTCCTCAGCGCGTTGGTGGGCGCCCCCGCTGCCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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