SE2850178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9183
  • Sorghum bicolor
  • SE2850178
  • PIF/harbinger
  • To2
  • chromosome_5:52946351-52946598
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    C                TTTTC   -   TCCGTCACATCGAATCTTTAGACGTATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGAT
  AGGCCTTGTTTA TTCC AAAAATTTTGCAAAAT     AGA TTC                                                                              
  |||||||||||| |||| ||||||||||||||||     ||| |||                                                                               
  TCCGGAACAAAT AAGG TTTTTAAAACGTTTTA     CTT TCA                                                                              
AA            G    T                ---TT   A   TCGTGAAAGCAAACATAAACTATTTATAACAGATTAATGCCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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