Plant MITE

SE2850179

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9184
Sorghum bicolor
SE2850179
PIF/harbinger
To2
chromosome_1:54270193-54270441
TAA
AGGCCTTGTTTAGTTTTCAGAAAATTTTGCAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TA                T     AA            TTTC     -TCC  TCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTACACAGTTCGGT
  AGGCCTTGTTTAGTTT CAGAA  TTTTGCAAAATT    AGATT    CG                                                                          
  |||||||||||||||| |||||  ||||||||||||    |||||    ||                                                                          C
  TCCGGAACAAATCAAG GTTTT  AAAACGTTTTAG    CTGTG    CG                                                                          
AA                -     AA            ----     ACAT  TGAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCTGATCAATCTGAGTTTTCTAAGCAGAGCAGTTAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850179

TAAGGCCTTGTTTAGTTTTCAGAAAATTTTGCAAAATTTTTCAGATTTCCCGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTACACAGTTCGGTCGAAATTGACGAGACGAATCTTTTGAGTCTAACTAGTCCATGATTGGACAATATTTGTCAAATACAAACGAAAGTGCTACAGTGTCGATTTTGCAAAAAATTTTGGAACTAAACAAGGCCTAA

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