SE2830180

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9185
  • Sorghum bicolor
  • SE2830180
  • hAT
  • Hat14
  • super_3223:665-1169
  • GATATATA
  • ATATATACAGAGGCGGAGCTC

Secondary structure and sequence

TSD    TIR
5'



3'
G     TA   A          CCCA  C   --ACA       -     CCCCAGCTAGCCACGATGAGGAGACCCAACAATCCTGATATGCTGTTATGATTCAATCTCATTTATTGTACAACGTTTCCTAAAAAAATATTATACAACGTGGCCATAGATAAGACGCAAAATGCACAATTGAGCAGTATATGTATTATATATCTTAGTTATTATATACTTATGCACTGCTTTTAAATATATTTAGCACATATA
 ATATA  CAG GGCGGAGCTC    TG GGC     GTGGGGC AGCTG                                                                                                                                                                                                            
 |||||  ||| ||||||||||    || |||     ||||||| |||||                                                                                                                                                                                                            T
 TATAT  GTC CCGCCTCGAG    AC TTG     CACCCCG CTATT                                                                                                                                                                                                            
A     AG   A          -CGA  T   ATATC       C     TTCGCTACTTATATTGACCATCATATTTTATAGTACATGTGTGTATTGTGTAAACAGCTCAAGTTTTTTTTATTTTAAGATTTACCGATTATTTACCGTTTATATTCATAATTTACATCATGAAAGGGTAAGTTTCCATCGTCAAACATCTTTTCTCGATTGTCTTGGTTCTATGGTTAAATTCTTGTTTACTCAATCACATAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End