Plant MITE

SE2810182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9187
Sorghum bicolor
SE2810182
Tc1/Mariner
St14
chromosome_7:36461115-36461377
TA
TACTCCCTATGTTTTTTATTAAGTGTCACAACTTGGTTTGTCCTAAGTCAAATGTGGGTATCTTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

     - -    G                   AC                       G GT         CATTG    CA     TA A         ATGTCATAA   TTATA      GATTTATTATAAGAAATA
TACTC C CTAT TTTTTTATTAAGTGTCACA  TTGGTTTGTCCTAAGTCAAATGT G  ATCTTTGAC     ATTT  AAAAA  C TATAGTTTC         GAT     TTCTTA                  
||||| | |||| |||||||||||||||||||  ||||||||||||||||||||||| |  |||||||||     ||||  |||||  | |||||||||         |||     ||||||                  C
ATGAG G GGTA AAAAAATAATTCACAGTGT  AACCAAACAGGATTCAGTTTGTA C  TGGAAACTG     TAAA  TTTTT  G ATATCAAAG         TAT     TATACA                  
     C A    -                   -A                       A GT         ATTGA    AC     AG A         ---------   -----      CTTAATGTATAATACTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810182

TACTCCCTATGTTTTTTATTAAGTGTCACAACTTGGTTTGTCCTAAGTCAAATGTGGGTATCTTTGACCATTGATTTCAAAAAATACATATAGTTTCATGTCATAAGATTTATATTCTTAGATTTATTATAAGAAATACTATCATAATATGTAATTCACATATTATGAAACTATAAGGATTTTTCAAAATAGTTAGTCAAAGGTTGCAATGTTTGACTTAGGACAAACCAAATGTGACACTTAATAAAAAAATGGAGCGAGTA

Copy Cancel