SE2830185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9190
  • Sorghum bicolor
  • SE2830185
  • hAT
  • Hat15
  • chromosome_1:63030462-63030644
  • GCAACGAA
  • CATAGTCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCAACGAA          --TAAAAC     ---------CACCACCTTC  -   TGGACCTGGGTTCATCGACCCCAACCCAGGTTCACGGGTTC
        CATAGTCACA        GGGTT                   AA CCC                                         
        ||||||||||        |||||                   || |||                                         A
        GTATCAGTGT        CCCAG                   CA CGC                                         
AAGCAACG          TTCAAAGA     CTACCCCAACTCCATGCCC  A   CATGCGATGAGCCCTCTTTAAAAATGTGAAGACCAGCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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