SE2850188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9193
  • Sorghum bicolor
  • SE2850188
  • PIF/harbinger
  • To14
  • chromosome_2:1511852-1512304
  • TAG
  • GGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                AT    TA         - AACC   AACCTTGAGACTCCCACCAAAATTCTAACACCAAAATTTTTTGGTTTTGGTGTTCACTTCCAAAAAATTTTGCAAAACTTTTCAGATTCCCTTCACATCGAATCTTGCGGCACATGTGTAGAGCATTAAATATAGATAAAAAATAACTAATTACACGGTTTATATGTAATTTACGAGATGAATCTTT
  GGGCCTTGTTTAGTTC  GAAG  TTTTGCAAA A    CAA                                                                                                                                                                                           
  ||||||||||||||||  ||||  ||||||||| |    |||                                                                                                                                                                                            
  TCCGGAACAAATCAAG  GTTT  TATAAAACC G    TTT                                                                                                                                                                                           
GA                --    --         C ----   TATGTTTTAAAAAACGATAAAACGTAAAACCTACATTTGTACAGGTTTTATAAAACCGGGATTTGAAAAACGTTTTAATTTATCCCTGTAACCAGAACAAATCAAGGTAAAAAAAACGTTTTACCTGTGACATCGTGAAAGCAAACATAAACTGTTTATAATAGGTTATTATCTTATTAATCCGAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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