SE2850189

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9194
  • Sorghum bicolor
  • SE2850189
  • PIF/harbinger
  • To35
  • chromosome_10:19771189-19771551
  • TTA
  • AGGTCATCCGCAATGGTTATTAAATAGTTAGCTAGGAGAAATTTTATTGGCTCTCAATAGCACTTTACAAATAGCTAGCGAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT   T A           TA      A        ----------     -   T       C   C   A   C    C           -G   TGATATATAAAAATAATAAAAAA     ACTCTCATTGGCTATCGAGGAGAGAGATCAAATAGCTAGCGACTTTCTAATAGCTAGCAACTCATAAATAA
  AGG C TCCGCAATGGT  TTAAAT GTTAGCTA          GGAGA AAT TTATTGG TCT AAT GCA TTTA AAATAGCTAGC  AGA                       GTAGT                                                                       
  ||| | |||||||||||  |||||| ||||||||          ||||| ||| ||||||| ||| ||| ||| |||| |||||||||||  |||                       |||||                                                                       C
  TCC G AGGCGTTACCA  AGTTTA CGATCGAT          TCTTT TTA AATAACC AGA TTA CGT AAAT TTTATCGATCG  TCT                       CGATC                                                                       
AT   C C           CA      G        AAACTAGATA     C   T       A   A   C   T    A           AA   ------------------TTCAG     GATAATCTTTCAGCGATCGATAACACTTCTCATAACACTCTCTCAATAAAGATCTTCTAACACGATCTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End