SE2830190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9195
  • Sorghum bicolor
  • SE2830190
  • hAT
  • Hat15
  • chromosome_1:20674282-20674469
  • GGGACGAC
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
    - A   ----- AGC    GTATCCAGGGTTCACCACCTTCGACCCTCGACCCGGATTCGTCGACCCCGACCCAGGTTCGCGGGTTCATTTTCGAA
  GG G CGA     C   TTTG                                                                             
  || | |||     |   ||||                                                                              
  GG C GTG     G   TGTT                                                                             
CA  A -   TATCA ---    TCAAATACCCAACTACCCCAGTTCCATGCCCCAGCGCCATGCACCATGCGATGAAGACTCTCTAAAAATGTGAAGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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