Plant MITE

SE2810197

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9202
Sorghum bicolor
SE2810197
Tc1/Mariner
St8
chromosome_4:64906890-64907040
TA
TACTCCCTCCATTCCAAATTATAAGACATTCTGGAT

Secondary structure and sequence

TSD TIR

5'

3'

                A      A  ---------CA        --TT   AGATACATTAGTTTAACTATGTATCTAGA
TACTCCCTCCATTCCA ATTATA GA           TTCTGGAT    TCT                             
|||||||||||||||| |||||| ||           ||||||||    |||                              
ATGAGGGAGGTAAGGT TGATAT CT           AAGATCTA    TTG                             
                A      A  ACAAAATCAAA        TATA   AAAACGACACGTGAATCTATATGTGATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810197

TACTCCCTCCATTCCAAATTATAAGACATTCTGGATTTTCTAGATACATTAGTTTAACTATGTATCTAGACATAGTGTATATCTAAGTGCACAGCAAAAGTTATATATCTAGAAAAACTAAAACATCATATAGTATGGAATGGAGGGAGTA

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